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dc.contributor.authorSchmoll, M.en
dc.contributor.authorDattenböck, C.en
dc.contributor.authorCarreras-Villaseñor, N.en
dc.contributor.authorMendoza-Mendoza, A.en
dc.contributor.authorTisch, D.en
dc.contributor.authorAlemán, M. I.en
dc.contributor.authorBaker, S. E.en
dc.contributor.authorBrown, C.en
dc.contributor.authorCervantes-Badillo, M. G.en
dc.contributor.authorCetz-Chel, J.en
dc.contributor.authorCristobal-Mondragon, G. R.en
dc.contributor.authorDelaye, L.en
dc.contributor.authorEsquivel-Naranjo, E. U.en
dc.contributor.authorFrischmann, A.en
dc.contributor.authorGallardo-Negrete, J.en
dc.contributor.authorGarcía-Esquivel, M.en
dc.contributor.authorGomez-Rodriguez, E. Y.en
dc.contributor.authorGreenwood, D. R.en
dc.contributor.authorHernández-Oñate, M.en
dc.contributor.authorKruszewska, J. S.en
dc.contributor.authorLawry, R.en
dc.contributor.authorMora-Montes, H. M.en
dc.contributor.authorMuñoz-Centeno, T.en
dc.contributor.authorNieto-Jacobo, Mariaen
dc.contributor.authorNogueira Lopez, Guillermoen
dc.contributor.authorOlmedo-Monfil, V.en
dc.contributor.authorOsorio-Concepcion, M.en
dc.contributor.authorPiłsyk, S.en
dc.contributor.authorPomraning, K. R.en
dc.contributor.authorRodriguez-Iglesias, A.en
dc.contributor.authorRosales-Saavedra, M. T.en
dc.contributor.authorSánchez-Arreguín, J. A.en
dc.contributor.authorSeidl-Seiboth, V.en
dc.contributor.authorStewart, A.en
dc.contributor.authorUresti-Rivera, E. E.en
dc.contributor.authorWang, C.-L.en
dc.contributor.authorWang, T.-F.en
dc.contributor.authorZeilinger, S.en
dc.contributor.authorCasas-Flores, S.en
dc.contributor.authorHerrera-Estrella, A.en
dc.date.accessioned2017-05-22T03:02:37Z
dc.date.available2016-02-10en
dc.date.issued2016-03en
dc.identifier.citationSchmoll, M., Dattenböck, C., Carreras-Villaseñor, N., Mendoza-Mendoza, A., Tisch, D., Alemán, M. I., . . . Cetz-Chel, J. (2016). The genomes of three uneven siblings: footprints of the lifestyles of three Trichoderma species. Microbiology and Molecular Biology Reviews, 80(1), 205-327.en
dc.identifier.issn1092-2172en
dc.identifier.urihttps://hdl.handle.net/10182/8109
dc.description.abstractThe genus Trichoderma contains fungi with high relevance for humans, with applications in enzyme production for plant cell wall degradation and use in biocontrol. Here, we provide a broad, comprehensive overview of the genomic content of these species for "hot topic" research aspects, including CAZymes, transport, transcription factors, and development, along with a detailed analysis and annotation of less-studied topics, such as signal transduction, genome integrity, chromatin, photobiology, or lipid, sulfur, and nitrogen metabolism in T. reesei, T. atroviride, and T. virens, and we open up new perspectives to those topics discussed previously. In total, we covered more than 2,000 of the predicted 9,000 to 11,000 genes of each Trichoderma species discussed, which is > 20% of the respective gene content. Additionally, we considered available transcriptome data for the annotated genes. Highlights of our analyses include overall carbohydrate cleavage preferences due to the different genomic contents and regulation of the respective genes. We found light regulation of many sulfur metabolic genes. Additionally, a new Golgi 1,2-mannosidase likely involved in N-linked glycosylation was detected, as were indications for the ability of Trichoderma spp. to generate hybrid galactose-containing N-linked glycans. The genomic inventory of effector proteins revealed numerous compounds unique to Trichoderma, and these warrant further investigation. We found interesting expansions in the Trichoderma genus in several signaling pathways, such as G-protein-coupled receptors, RAS GTPases, and casein kinases. A particularly interesting feature absolutely unique to T. atroviride is the duplication of the alternative sulfur amino acid synthesis pathway.en
dc.format.extent205-327en
dc.language.isoenen
dc.publisherAmerican Society for Microbiologyen
dc.relationThe original publication is available from - American Society for Microbiology - https://doi.org/10.1128/MMBR.00040-15en
dc.relation.urihttps://doi.org/10.1128/MMBR.00040-15en
dc.rights© 2016, American Society for Microbiology. All Rights Reserved.en
dc.rightsAttribution-NonCommercial-ShareAlike 4.0 International*
dc.subjectgenomeen
dc.subjectTrichodermaen
dc.subjectTrichoderma spen
dc.subjectfungien
dc.subjectchromatinen
dc.subjectG-proteinen
dc.subjecttransporten
dc.subjectmetabolismen
dc.subjectsignalen
dc.subjectgeneen
dc.subjectproteinen
dc.subjectMicrobiologyen
dc.subject.meshHistone Deacetylasesen
dc.subject.meshFungal Proteinsen
dc.subject.meshHistonesen
dc.subject.meshTranscription Factorsen
dc.subject.meshPhylogenyen
dc.subject.meshSignal Transductionen
dc.subject.meshChromatin Assembly and Disassemblyen
dc.subject.meshGene Expression Regulation, Fungalen
dc.subject.meshProtein Processing, Post-Translationalen
dc.subject.meshProtein Structure, Tertiaryen
dc.subject.meshGenome, Fungalen
dc.subject.meshHistone Acetyltransferasesen
dc.subject.meshMetabolic Networks and Pathwaysen
dc.titleThe genomes of three uneven siblings: Footprints of the lifestyles of three Trichoderma speciesen
dc.typeJournal Article
lu.contributor.unitLincoln Universityen
lu.contributor.unitBio-Protection Research Centreen
dc.identifier.doi10.1128/MMBR.00040-15en
dc.subject.anzsrc0605 Microbiologyen
dc.subject.anzsrc060503 Microbial Geneticsen
dc.subject.anzsrc060505 Mycologyen
dc.subject.anzsrc060702 Plant Cell and Molecular Biologyen
dc.subject.anzsrc06 Biological Sciencesen
dc.subject.anzsrc10 Technologyen
dc.subject.anzsrc11 Medical and Health Sciencesen
dc.relation.isPartOfMicrobiology and Molecular Biology Reviewsen
pubs.issue1en
pubs.organisational-group/LU
pubs.organisational-group/LU/BPRC
pubs.organisational-group/LU/Research Management Office
pubs.organisational-group/LU/Research Management Office/QE18
pubs.publication-statusPublisheden
pubs.volume80en
dc.identifier.eissn1098-5557en
lu.identifier.orcid0000-0002-1532-3406


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